| EvilMinion |
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Amphibious (Ex) Creatures with this special quality have the aquatic subtype, but they can survive indefinitely on land.
So if you're amphibious, you therefore have the aquatic subtype...
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Aquatic Subtype: These creatures always have swim speeds and can move in water without making Swim checks. An aquatic creature can breathe water.
Having said aquatic subtype allows you to breathe water.
Therefore, yes, becoming amphibious does allow you to breathe water... (working under the assumption that when you say you're character has become amphibious, that you mean they have gained the aquatic subtype)
At least as it appears to be written, it is so =)