| Ravingdork |
When making a full attack action, a typical lizardfolk gets one attack with his morningstar, and one with his bite. He also has two natural claw attacks, but typically doesn't use those since those hands are taken up by his shield and morninstar.
Therefore, a typical lizardfolk's attack routines are as follows:
morningstar +2 (1d8+1), bite +0 (1d4) - with shield and morningstar
OR
claw +2 (1d4+1), bite +2 (1d4+1) - with shield
OR
2 claws +2 (1d4+1), bite +2 (1d4+1)* - without shield and morningstar
If you are referring to the attack penalty to natural attacks for being used in conjunction with natural weapons, that penalty is already accounted for in the above stats. Most of the time, you use the attack routine as written. Game developers try to minimize the work you have to do at the table, in order to expedite play. Sometimes (but not always) they even go so far as to have separate attack lines to account for rage, power attack, and similar abilities.
claw +2 (1d4+1), claw +2 (1d4+1), bite +2 (1d4+1)
I hope that helps!