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I think they're going in the opposite direction, actually...as I recall, they said that the mystic could serve as the follower of a deity, but could also fill a number of other roles, which makes me suspect that your choice of deity is primarily flavor instead of having a mechanical effect. I could be wrong, though...
Edit: Though even if there's a particular archetype or built-in path for deity worship, one suspects with it potentially filling other roles, said options will be necessarily more sparse...but again, I could be wrong.
Many of the 'modern day' Golarion gods are heavily tied into the outer planes, which would logically be less of a focus in a setting where exploring *this* potentially infinite plane is the adventure, instead of going to Axis or the City of Brass or recreating the epic scene from 'A Paladin in Hell.' That's not necessarily the case, but if that logic is followed, then gods with a stronger presence on the material plane of Golarion might find themselves more relevant to the setting than some distant god in some other dimension who never calls and never visits.
Such gods include Desna, and the various Elder Gods/Great Old Ones.
Being set in the future, it's also likely that there will be some new additions, and some missing names. Nobody wants their favorite god to be gone, but, if there are no Dwarves in Starfinder (just speculating, I have no idea!), then there's not much use for Torag and the entire dwarven sub-pantheon (Angradd, Bolka, Drangvitt, etc.). Just as the Azlanti worshipped gods that no longer exist (Acavna, etc.), it's entirely possible that new gods have risen, and old ones dropped out of favor (or died, moved on, whatever). Calistria, on the other hand, and the other 'elven gods,' already have a presence on another planet, and their faiths seem much more likely to weather the loss of Golarion (and it's churches and worshippers).
I imagine that what is presented on the worship of Rovagug will offer some conspiratorial theories about what happened to Golarion 'the Cage' itself... If his followers no longer exist, or are split into warring cults with very different tenets about 'what happened' or think he's out there wandering the universe, a 'Destroyer of Worlds,' that could lead to all sorts of (unprovable) fun theories.
What comes of the 'Starstone Scions' (Iomedae, Cayden, Norgie) or self-ascended gods (Irori, Urgathoa, Nethys) also could be fuel for theories and conspiracies. Are they all (mysteriously) gone? Are there even *more* of them?
Of the 'lesser' gods, Brigh seems likely to be a big deal, but others, like Gyronna and, especially, Hanspur, might be too 'regional' or 'Golarion-specific' to make the jump to a post-Golarion Starfinder setting... Then again, spite never goes out of style, and the 'River Rat' could transition to be the god of tramp steamers among the starlanes, with the occasional drowning of river pirates being replaced by hurling them out airlocks...